A marriage of robotics and artificial intelligence promises to automate the detection of harmful algal blooms, which can trigger shellfish harvesting bans and fill wildlife rescue centers with sickened animals.
The Imaging FlowCytobot (IFCB) takes water samples around the clock and photographs phytoplankton cells floating within. “It’s got a huge amount of potential for figuring out what plankton is in the water column and monitoring for HABs,” says Alexis Fischer, a postdoctoral fellow at the University of California, Santa Cruz with Raphael Kudela. Fischer and colleagues are building a phytoplankton image classifier already capable of identifying more than 90 percent of cells photographed by IFCB at the Santa Cruz Wharf. The...Read More
Local green sturgeon are struggling. The population that spawns in the Sacramento –San Joaquin River Delta was declared federally threatened in 2006. Researchers at UC Davis, which hosts the world’s only green sturgeon rearing program, are now trying to figure out why the fish is in trouble. “If we knew how large they are when they’re moving through each portion of the system, we’d know a lot more about the threats they face at each life state, and where we...Read More
The culprit behind poisoned seabirds, closed crab fisheries, stranded sea lions, and shellfish poisoning in humans are often diatoms producing the neurotoxin domoic acid. Now, scientists have identified the genes and biochemical processes responsible in diatoms of the genus Pseudo-nitzschia. The finding, published in the journal Science, opens the door to rapid genetic monitoring of algal blooms as a means to spot nascent harmful blooms and track their spread. “By identifying the genes that encode domoic acid production, we are...Read More
For years, scientists monitoring water quality in streams and rivers have collected mixed samples of aquatic invertebrates from riffles, pools, and transition zones. But UC Santa Barbara stream ecologist David Herbst and his colleagues recently finished a 15-year study of the benthic life in small streams of the central Sierra that examined pools and riffles separately. They found that during flood and drought events, these habitats and their inhabitants become more uniform. But while floods come and go, droughts can...Read More
A Stream of Science Takeaways. ESTUARY News sent reporters to the biennial Bay-Delta Science Conference in September. This special edition of Pearls shares more than 20 takeaways.Read More
Two banana-yellow buoys anchored along the Tiburon shore will be San Francisco Bay’s sentinels against shifts in water chemistry due to climate change. Known as the Bay Ocean Buoy (BOB) and the Marine Acidification Research Inquiry (MARI), the permanent moorings will provide long-term monitoring of acidity and carbon dioxide levels—key indicators of how the changing ocean will impact Bay chemistry. “It’s taken over three years of perseverance and partnership building to get these instruments into the water, but now we’ll...Read More
“The rule for releasing water is rigid and dates to the 1950s,” says Jay Jasperse of the Sonoma County Water Agency. Near the end of 2012, the US Army Corps of Engineers released 28,000 acre-feet of water from Lake Mendocino. Then followed 14 of the driest months on record. The key to managing the drought and deluge cycle of California lies in a better understanding of atmospheric rivers, intense winter storms that transport water from the tropics to the West...Read More
Cold water, essential for the life cycle of Chinook salmon, is all too often in short supply along the Sacramento River. A primary cause: California’s massive water conveyance system, using reservoirs, dams, and hydroelectric plants to divert water and deliver power to farms and cities. “When we started releasing water in spring, we let cold water out too early. None was left by fall, when salmon really needed it,” says USBR hydraulic engineer Tracy Vermeyen. Two clever innovations have been...Read More
There’s a common perception in California that more water is always better for fish. Yet many native species possess traits that allow them to persist through harsh, dry summers and cyclical drought. Over the long run, summer releases from reservoirs and urban runoff can harm local fish by laying out a welcome mat for non-native species adapted to perennial flows, Leidy says. “In areas where streams have been altered by humans, where the natural hydrograph has changed, that’s where you...Read More
“White sturgeon are a popular species, so we want to keep a close eye on contaminants in their tissues.” Recent RMP studies have unearthed a few new interesting things about sturgeon - first that selenium keeps turning up in specimens from certain areas, and second that testing may not have to be deadly. Growing up to 20 feet long and living up to 100 years, today’s living fish have become valuable for the stories that they tell.Read More
It was past midnight when Lester McKee pulled the plug. He’d been watching the weather for days on screen, looking for the perfect storm of conditions he needed to send his team out to sample the Guadalupe River in Santa Clara County. He knew there’d been enough rain already to saturate the soil and surpass annual averages. Zooming in on real-time sensors aimed at Santa Clara Valley Water District reservoirs, he could see they were full enough to spill downstream....Read More
Phytophthora is difficult to detect in nurseries, plant materials, and planting sites until it has done its damage. To develop early-detection options, H.T. Harvey and Associates are training a female cattle dog/border collie mix named Bolt to sniff out Phytophthora. Part of the Harvey Dog ecological-scent detection program, Bolt has accurately identified four species of Phytophthora in the lab. If her training in a natural setting is successful, Bolt could get to work helping minimize the spread of Phytophthora. Potential beneficiaries...Read More
The day I began editing a monolithic overview of Santa Clara County’s Coyote Watershed I received a gift from my handler. He’d just thrown me for a loop by suggesting we describe not just Coyote Creek’s vast extent and myriad One Water management issues, but also its six sub-watersheds. I asked him to summarize the differences. Rather than composing a detailed memo, or searching water district literature for the materials, he logged into Bay Area Greenprint. Within hours I had...Read More
Among the small natural features that can have disproportionate ecological value are the bark of grand old trees, which has nooks and crannies that provide microhabitats for wildlife; patches of native plants alongside agricultural fields, which can provide some species with their only remaining natural habitat; and rocky outcrops, which nurture unique and diverse flora and fauna. Other benefits of conserving these modest yet influential—and often under-appreciated—landscape features include relative ease and affordability as well as compatibility with land uses...Read More
Community Conservation Solutions is piloting a new analytical tool that not only taps an untapped local water supply — the 969 miles of metropolitan storm drains in Los Angeles — but also has the metrics to earn carbon credits for doing so. “It’s very practical, you just stick your straw in the local water source rather than pumping it into the city from hundreds of miles away,” says the NGO’s director Esther Feldman. The tool helps land and water managers prioritize projects...Read More
Walking in the door of the fourth Ocean Climate Summit this May and finding Amy Hutzel, long-time chair of the committee in charge of implementing a conservation plan for the San Francisco Estuary, I asked her what she was doing out of her watershed? “Dipping my toe in the Pacific, “ she said. “For a while now, we’ve been working to build partnerships inland and offshore. It’s all one estuary.”Read More
Side by side at a Redwood City marina, two vessels await their very different destinies. The Research Vessel Polaris, a classy 96-foot yacht, was built in 1927 as a pleasure craft for a Los Angeles tycoon. Beyond a few streaks of rust, her age isn’t showing. After a series of owners, she spent decades as the workhorse of the US Geological Survey’s San Francisco Bay science program, carrying researchers on transects across the Bay and into the Delta. Much of...Read More
After four of California’s driest years on record, the rain we’ve gotten this winter is hardly a drought buster. But it’s still a relief. Just a year ago, our “wet” season was so dry that state water officials panicked. Major reservoirs were drawn way down, and record-low snowpack would limit replenishment to a trickle. Water managers worried about the hot, dry months. Would reservoirs still hold enough for freshwater releases to keep saltwater from pushing deep into the Sacramento-San Joaquin...Read More
USGS scientists headed up river this June to see whether two Asian clams had also headed upstream with the drought. When there’s less fresh water flowing out to sea, salty ocean water intrudes inland, and changes the distribution of these pesky invertebrates. Potamocorbula like it saltier than Corbicula, and usually hang out in the Suisun Bay region. But scientists suspect drought conditions may have changed all that, and with it, how and when the contaminant selenium gets cycled through the...Read More
As the dry, warm days went on and on and on this winter, two guys intimate with California’s Sacramento San Joaquin River delta shifted gears. One reassigned staff from flood to drought response, and the other lay awake at night imagining barriers across various slough openings. By early February, some Sierra reservoirs were so low, and so close to “dead pool” level, that the water projects stopped pumping and delivering. Farmers had to retrench, communities realized they might only have...Read More
Nothing could be stranger than sitting in the dark with thousands of suits and heels, watching a parade of promises to decarbonize from companies and countries large and small, reeling from the beauties of big screen rainforests and indigenous necklaces, and getting all choked up.
It was day two of the September 2018 Global Climate Action Summit in San Francisco when I felt it.
At first I wondered if I was simply starstruck. Most of us labor away trying to fix one small corner of the planet or another without seeing the likes of Harrison Ford, Al Gore, Michael Bloomberg, Van Jones, Jerry Brown – or the ministers or mayors of dozens of cities and countries – in person, on stage and at times angry enough to spit. And between these luminaries a steady stream of CEOs, corporate sustainability officers, and pension fund managers promising percentages of renewables and profits in their portfolios dedicated to the climate cause by 2020-2050.
I tried to give every speaker my full attention: the young man of Vuntut Gwichin heritage from the edge of the Yukon’s Arctic National Wildlife Refuge who pleaded with us not to enter his sacred lands with our drills and dependencies; all the women – swathed in bright patterns and head-scarfs – who kept punching their hearts. “My uncle in Uganda would take 129 years to emit the same amount of carbon as an American would in one year,” said Oxfam’s Winnie Byanyima.
“Our janitors are shutting off the lights you leave on,” said Aida Cardenas, speaking about the frontline workers she trains, mostly immigrants, who are excited to be part of climate change solutions in their new country.
The men on the stage, strutting about in feathers and pinstripes, spoke of hopes and dreams, money and power. “The notion that you can either do good or do well is a myth we have to collectively bust,” said New Jersey Governor Phil Murphy whose state is investing heavily in offshore wind farms.
“Climate change isn’t just about risks, it’s about opportunities,” said Blackrock sustainable investment manager Brian Deese.
But it wasn’t all these fine speeches that started the butterflies. Halfway through the second day of testimonials, it was a slight white-haired woman wrapped in an azure pashmina that pricked my tears. One minute she was on the silver screen with Alec Baldwin and the next she taking a seat on stage. She talked about trees. How trees can solve 30% of our carbon reduction problem. How we have to stop whacking them back in the Amazon and start planting them everywhere else. I couldn’t help thinking of Dr. Suess and his truffala trees. Jane Goodall, over 80, is as fierce as my Lorax. Or my daughter’s Avatar.
Analyzing my take home feeling from the event I realized it wasn’t the usual fear – killer storms, tidal waves, no food for my kids to eat on a half-baked planet – nor a newfound sense of hope – I’ve always thought nature will get along just fine without us. What I felt was relief. People were actually doing something. Doing a lot. And there was so much more we could do.
As we all pumped fists in the dark, as the presentations went on and on and on because so many people and businesses and countries wanted to STEP UP, I realized how swayed I had let myself be by the doomsday news mill.
“We must be like the river, “ said a boy from Bangladesh named Risalat Khan, who had noticed our Sierra watersheds from the plane. “We must cut through the mountain of obstacles. Let’s be the river!”
Or as Harrison Ford less poetically put it: “Let’s turn off our phones and roll up our sleeves and kick this monster’s ass.”
4th California Climate Change Assessment Blues
by Isaac Pearlman
Since California’s last state-led climate change assessment in 2012, the Golden State has experienced a litany of natural disasters. This includes four years of severe drought from 2012 to 2016, an almost non-existent Sierra Nevada snowpack in 2014-2015 costing $2.1 billion in economic losses, widespread Bay Area flooding from winter 2017 storms, and extremely large and damaging wildfires culminating with this year’s Mendocino Complex fire achieving the dubious distinction of the largest in state history. California’s most recent climate assessment, released August 27th, predicts that for the state and the Bay Area, we can expect even more in the future.
The California state government first began assessing climate impacts formally in 2006, due to an executive order by Governor Schwarzenegger. California’s latest iteration and its fourth overall, includes a dizzying array of 44 technical reports; three topical studies on climate justice, tribal and indigenous communities, and the coast and ocean; as well as nine region-specific analyses.
The results are alarming for our state’s future: an estimated four to five feet of sea level rise and loss of one to two-thirds of Southern California beaches by 2100, a 50 percent increase in wildfires over 25,000 acres, stronger and longer heat waves, and infrastructure like airports, wastewater treatment plants, rail and roadways increasingly likely to suffer flooding.
For the first time, California’s latest assessment dives into climate consequences on a regional level. Academics representing nine California regions spearheaded research and summarized the best available science on the variable heat, rain, flooding and extreme event consequences for their areas. For example, the highest local rate of sea level rise in the state is at the rapidly subsiding Humboldt Bay. In San Diego county, the most biodiverse in all of California, preserving its many fragile and endangered species is an urgent priority. Francesca Hopkins from UC Riverside found that the highest rate of childhood asthma in the state isn’t an urban smog-filled city but in the Imperial Valley, where toxic dust from Salton Sea disaster chokes communities – and will only become worse as higher temperatures and less water due to climate change dry and brittle the area.
According to the Bay Area Regional Report, since 1950 the Bay Area has already increased in temperature by 1.7 degrees Fahrenheit and local sea level is eight inches higher than it was one hundred years ago. Future climate will render the Bay Area less suitable for our evergreen redwood and fir forests, and more favorable for tolerant chaparral shrub land. The region’s seven million people and $750 billion economy (almost one-third of California’s total) is predicted to be increasingly beset by more “boom and bust” irregular wet and very dry years, punctuated by increasingly intense and damaging storms.
Unsurprisingly, according to the report the Bay Area’s intensifying housing and equity problems have a multiplier affect with climate change. As Bay Area housing spreads further north, south, and inland the result is higher transportation and energy needs for those with the fewest resources available to afford them; and acute disparity in climate vulnerability across Bay Area communities and populations.
“All Californians will likely endure more illness and be at greater risk of early death because of climate change,” bluntly states the statewide summary brochure for California’s climate assessment. “[However] vulnerable populations that already experience the greatest adverse health impacts will be disproportionately affected.”
“We’re much better at being reactive to a disaster than planning ahead,” said UC Berkeley professor and contributing author David Ackerly at a California Adaptation Forum panel in Sacramento on August 27th. “And it is vulnerable communities that suffer from those disasters. How much human suffering has to happen before it triggers the next round of activity?”
The assessment’s data is publicly available online at “Cal-adapt,” where Californians can explore projected impacts for their neighborhoods, towns, and regions.
The results are alarming for our state’s future: an estimated four to five feet of sea level rise and loss of one to two-thirds of Southern California beaches by 2100, a 50 percent increase in wildfires over 25,000 acres, stronger and longer heat waves, and infrastructure like airports, wastewater treatment plants, rail and roadways increasingly likely to suffer flooding.