Bay Fish Still Not Good Eating

Bay Fish Still Not Good Eating

After decades of efforts to clean up San Francisco Bay, its fish still carry a toxic load that makes them unfit for human consumption. A new Regional Monitoring Program (RMP) report on its 2019 sport fish survey contains some positive news: an overall decline in polybrominated diphenyl ethers (PBDE), hopeful trends in polychlorinated biphenyls (PCBs) and dioxin, and continued low selenium levels. But no downward trend was found for mercury. Then there are per- and polyfluoroalkyl substances (PFAS), which the...
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sunset delta climate map

MEGA-PEARLS Part 4-Climate, Bay-Delta Science Conference, April 2021

A Stream of Science Takeaways. ESTUARY News sent reporters to the biennial Bay-Delta Science Conference in September. This special edition of Pearls shares more than 20 takeaways.
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Science-in-Short ~ Podcast

Drift, Drop or Floc? Tailing Sediment as it Moves Through Marsh Margins This June two USGS scientists will be trying to get as close as they can to the edge of the South Bay’s Whale’s Tail Marsh to lay out their tools: tiles, filter paper, current profilers, and other sediment accretion measuring instruments. Estuary Reporter Ariel Rubissow Okamoto interviews reseachers Jessie Lacy and Karen Thorne about what they’re looking for at the marsh edge, and how it may help us...
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pesticide resistance delta map

MEGA-PEARLS Part 3-HABs & More, Bay-Delta Science Conference, April 2021

A Stream of Science Takeaways. ESTUARY News sent reporters to the biennial Bay-Delta Science Conference in September. This special edition of Pearls shares more than 20 takeaways.
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photo of salmon injection USFWS

MEGA-PEARLS Part 2-Fish-Birds, Bay-Delta Science Conference, April 2021

A Stream of Science Takeaways. ESTUARY News sent reporters to the biennial Bay-Delta Science Conference in September. This special edition of Pearls shares more than 20 takeaways.
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Above: Lewis holding white sturgeon in Delta. Photo: Jim Ervin

MEGA-PEARLS-Part 1-Diversity, April 2021

A Stream of Science Takeaways. ESTUARY News sent reporters to the biennial Bay-Delta Science Conference in September. This special edition of Pearls shares more than 20 takeaways.
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As agencies wrangle over how best to protect the Delta’s dwindling native fish species, researchers want to see more consideration to the needs of the estuary’s birds.

 “If we want to restore the ecology of the Delta, we can’t just be looking in the water,” says Kristen E. Dybala of Point Blue Conservation Science. In a paper published in San Francisco Estuary and Watershed Science, Dybala and two co-authors make the case that “birds and their habitat needs are often not addressed in science syntheses, conservation planning, and large-scale restoration initiatives in the Delta.” While some birds use the same sloughs and channels that support such high-profile...
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Human activity could undermine the success of efforts to reintroduce sea otters to San Francisco Bay.

 Although past studies have found that the Bay could support 1.5 times the entire current southern sea otter population, a new study from the Estuary & Ocean Science Center at San Francisco State University and published by PeerJ last November indicates that anthropogenic risks like contaminants, vessel traffic, and oil spills may constrain the otter’s ability to gain a foothold. The study, led by Jane Rudebusch, at the time graduate student at SFSU, looked at the types of human stressors...
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The increasing flow of microplastics entering San Francisco Bay from trash, fleece clothing, car tires, and myriad other sources is likely being trapped by a surprising filter: native eelgrass (Zostera marina).

Miniscule polymer pieces the size of a sesame seed or tinier, microplastics pose a growing pollution threat to marine environments worldwide. To understand how microplastics accumulate in nearshore, urbanized environments, researchers quantified the prevalence of microplastics in and around the Zostera marina meadows of Deerness Sound, in the Orkney Islands of Scotland. Mark Hartl and colleagues at Heriot-Watt University found that microplastic flakes, fibers, and fragments were twice as concentrated in the water above eelgrass meadows as in adjacent control...
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Spawning and rearing habitat for important forage-fish species in San Francisco Bay apparently shifts geographically by many miles depending on how much freshwater is flowing into the Estuary.

In a recent study, a team of scientists found that in a dry year, Pacific herring and longfin smelt larvae occurred farther up the Estuary than in a wet year, when spawning and recruitment was pushed seaward. The results suggest that the fish have broader geographic ranges than previously believed, a finding that could inform efforts to manage and protect their habitat. Biologists have long assumed that longfin smelt, a protected species in steep decline for decades, spawn strictly in...
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Londons Roam and Feast on the Bay circa 1910

Jack London usually sailed west whenever he left the Oakland Municipal Wharf, but on December 18, 1913, he headed east — because he could. Although the canal connecting the Oakland Estuary to San Leandro Bay had been completed in 1902, it wasn’t until the U.S. Army Corps of Engineers widened and deepened the canal in 1913 that it became navigable. Aboard the Roamer, a 30-foot yawl London bought used in 1910, Jack and his wife, Charmian, approached the Park Street...
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Match Points in Stormwater Soup

Scientists studying environmental pollutants tend to divide them into two distinct groups. One includes “legacy” contaminants that drew attention during the early stages of the environmental movement, like mercury, PCBs, and some pesticides. The other is a much larger class of “emerging” contaminants whose production or monitoring began more recently and about whom less is known; think pharmaceuticals, plastic additives, and flame retardants. Effluent from wastewater treatment plants is often seen as the primary source of emerging contaminants in San...
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A team of scientists is close to chasing down every last thing that happens to nitrogen in wastewater as it passes through the soils and plants of a horizontal levee.

Not only is 97% of the nitrogen removed, but also trace pharmaceuticals. “You just have to focus on where the water is going,” says environmental engineer Aidan Cecchetti, referring to the UC Berkeley-Stanford-ReNUWIt team’s experimentation with three components of flow through the levee system—under the surface, over the surface, or into the air (through evapotranspiration). “In the wastewater pumped to the subsurface, you see full removal of every contaminant except phosphorous.” What’s most astonishing is how much of the work...
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Although the Covid-19 pandemic and attendant economic cataclysm have tripped up some ambitious plans for funding climate resilience in California, other measures to integrate adaptation and planning are still on track.

In July, the Metropolitan Transportation Commission and the Association of Bay Area Governments released the draft of Plan Bay Area 2050, a 30-year plan to guide growth in the nine-county region. “The biggest new integration in the plan is a set of investments to protect our Bay and ocean shorelines from rising sea levels,” says MTC’s Dave Vautin. The plan calls for just under $20 billion in investments ranging from seawalls and traditional levees to horizontal levees and wetland restoration...
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Parks and Cities Seek Shore Resilience

By Joe Eaton For Alameda County, climate vulnerability is no abstraction. King tides push the waters of San Leandro Bay into parking lots at Martin Luther King Regional Shoreline. When Diablo winds rattle the eucalyptus, Berkeley and Oakland hill-dwellers recall the conflagrations of 1923 and 1991 and dread the next one. The county feels the bite of both edges of the climate sword: fire and flood. With highways, BART, a major airport and seaport, business parks, and sports complexes, the...
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Greener Fatter Levees Boon to Richmond Resilience?

By Daniel McGlynn In May, despite the now normal issues of groups gathering for video calls and virtual PowerPoints, the San Francisco Bay Restoration Authority voted unanimously to fund the early stages of a massive new infrastructure project along the North Richmond shoreline with a grant of $644,709. The shoreline is now one step closer to becoming home to a horizontal, or living, levee that provides both flood protection and habitat. The proposed project, in the planning stages since 2017,...
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San Francisco Prepares for Water From All Directions

By Isaac Pearlman “Even a city with as many resources as San Francisco has can’t do this [alone],” says the director of the Port of San Francisco’s Waterfront Resilience Program Lindy Lowe, speaking of the climate change threats looming over the City by the Bay. “It’s too big.” The perils San Francisco faces include three-to-ten feet of sea-level rise this century, a sharp increase in extreme heat days, and more severe floods and drought. As city officials grapple with today’s...
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Time Travel on the Bay

By Aleta George “In day-to-day life we look at the world in a three-dimensional view,” Liam O’Donoghue, host and producer of the award-winning podcast East Bay Yesterday, says, “but when you know history, you can look at it through four dimensions because you can see into the past using your imagination.” On a recent boat tour of the East Bay shoreline led by O’Donoghue, Captain Andy threaded his vessel Pacific Pearl through the Berkeley pier as if it were a...
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Jan Thompson has always been most interested in what happens down at the bottom of the Bay.

The zone of interaction between the critters in the oozes and the water column above—where specks of sediment, nutrients, and fish food cycle through clam siphons into the Estuary—is the particular specialty of this US Geological Survey scientist. “I’m most proud of the research I’ve done establishing a solid connection between bivalve grazing and phytoplankton growth,” she says. When USGS first hired Thompson, who retired in October 2019, most women in the Menlo Park office were secretaries. She’s since trained...
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After nearly 30 years in refuge management on public lands, Anne Morkill is leaving government, but not wildlife, behind.

Following her February 2020 retirement from managing the San Francisco Bay National Wildlife Refuge Complex, which she led for nearly a decade, Morkill is taking the helm at the Laguna de Santa Rosa Foundation, a nonprofit that stewards one of the largest freshwater wetlands complexes on the northern California coast. Morkill believes that San Francisco Bay provides unusual potential for restoring habitat for wildlife in a highly urban environment. “That’s what makes it so special,” she says, citing the Bay...
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